Question

HL7 format

  • 21 November 2023
  • 3 replies
  • 30 views
catchcharan
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Hi Team,

 

Does StreamSets support HL7 data format? I know there is a python way of doing this.

 

Thanks,

Meher

3 replies

Bikram
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Userlevel 5
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@catchcharan 

can you please elaborate your case , how the data format should looks like .

I am not aware of HL7 data format.

 

Thanks & Regards

Bikram_

catchcharan
Rank

Bikram,

 

Here is the quick google results on sample HL7 data format.

MSH|^~\&|SendingApp|SendingFac|ReceivingApp|ReceivingFac|20120411070545||ORU^R01|59689|P|2.3 PID|1|12345|12345^^^MIE&1.2.840.114398.1.100&ISO^MR||MOUSE^MINNIE^S||19240101|F|||123 MOUSEHOLE LN^^FORT WAYNE^IN^46808||||||||||||||||||| PV1|1|O|||||71^DUCK^DONALD||||||||||||12376|||||||||||||||||||||||||20120410160227|||||| ORC|RE||12376|||||||100^DUCK^DASIY||71^DUCK^DONALD|^^^||20120411070545||||| OBR|1||12376|cbc^CBC|R||20120410160227|||22^GOOF^GOOFY|||Fasting: No|201204101625||71^DUCK^DONALD||||||201204101630|||F||^^^^^R|||||||||||||||||85025| OBX|1|NM|wbc^Wbc^Local^6690-2^Wbc^LN||7.0|/nl|3.8-11.0||||F|||20120410160227|lab|12^XYZ LAB| OBX|2|NM|neutros^Neutros^Local^770-8^Neutros^LN||68|%|40-82||||F|||20120410160227|lab|12^XYZ LAB| OBX|3|NM|lymphs^Lymphs^Local^736-9^Lymphs^LN||20|%|11-47||||F|||20120410160227|lab|12^XYZ LAB| OBX|4|NM|monos^Monos^Local^5905-5^Monos^LN||16|%|4-15|H|||F|||20120410160227|lab|12^XYZ LAB| OBX|5|NM|eo^Eos^Local^713-8^Eos^LN||3|%|0-8||||F|||20120410160227|lab|12^XYZ LAB| OBX|6|NM|baso^Baso^Local^706-2^Baso^LN||0|%|0-1||||F|||20120410160227|lab|12^XYZ LAB| OBX|7|NM|ig^Imm Gran^Local^38518-7^Imm Gran^LN||0|%|0-2||||F|||20120410160227|lab|12^XYZ LAB| OBX|8|NM|rbc^Rbc^Local^789-8^Rbc^LN||4.02|/pl|4.07-4.92|L|||F|||20120410160227|lab|12^XYZ LAB| OBX|9|NM|hgb^Hgb^Local^718-7^Hgb^LN||13.7|g/dl|12.0-14.1||||F|||20120410160227|lab|12^XYZ LAB| OBX|10|NM|hct^Hct^Local^4544-3^Hct^LN||40|%|34-43||||F|||20120410160227|lab|12^XYZ LAB| OBX|11|NM|mcv^Mcv^Local^787-2^Mcv^LN||80|fl|77-98||||F|||20120410160227|lab|12^XYZ LAB| OBX|12|NM|mch^Mch||30|pg|27-35||||F|||20120410160227|lab|12^XYZ LAB| OBX|13|NM|mchc^Mchc||32|g/dl|32-35||||F|||20120410160227|lab|12^XYZ LAB| OBX|14|NM|plt^Platelets||221|/nl|140-400||||F|||20120410160227|lab|12^XYZ LAB|

Python has package “python-hl7” that can read this format and convert to CSV etc… StreamSets too talked about HL7 environment in this article on soluiton briefing https://streamsets.com/wp-content/uploads/StreamSets-Solution-Brief-Healthcare-1.pdf

 

Thanks,

Meher

Bikram
Rank
Userlevel 5
Badge +1

@catchcharan 

Kindly check if it works in jython evaluator processors. Make sure the library has been installed in your SDC.

 

from hl7apy.parser import parse_message

hl7_message = "MSH|^~\&|SendingApp|SendingFac|ReceivingApp|ReceivingFac|20120411070545||ORU^R01|59689|P|2.3 PID|1|12345|12345^^^MIE&1.2.840.114398.1.100&ISO^MR||MOUSE^MINNIE^S||19240101|F|||123 MOUSEHOLE LN^^FORT WAYNE^IN^46808||||||||||||||||||| PV1|1|O|||||71^DUCK^DONALD||||||||||||12376|||||||||||||||||||||||||20120410160227|||||| ORC|RE||12376|||||||100^DUCK^DASIY||71^DUCK^DONALD|^^^||20120411070545||||| OBR|1||12376|cbc^CBC|R||20120410160227|||22^GOOF^GOOFY|||Fasting: No|201204101625||71^DUCK^DONALD||||||201204101630|||F||^^^^^R|||||||||||||||||85025| OBX|1|NM|wbc^Wbc^Local^6690-2^Wbc^LN||7.0|/nl|3.8-11.0||||F|||20120410160227|lab|12^XYZ LAB| OBX|2|NM|neutros^Neutros^Local^770-8^Neutros^LN||68|%|40-82||||F|||20120410160227|lab|12^XYZ LAB| OBX|3|NM|lymphs^Lymphs^Local^736-9^Lymphs^LN||20|%|11-47||||F|||20120410160227|lab|12^XYZ LAB| OBX|4|NM|monos^Monos^Local^5905-5^Monos^LN||16|%|4-15|H|||F|||20120410160227|lab|12^XYZ LAB| OBX|5|NM|eo^Eos^Local^713-8^Eos^LN||3|%|0-8||||F|||20120410160227|lab|12^XYZ LAB| OBX|6|NM|baso^Baso^Local^706-2^Baso^LN||0|%|0-1||||F|||20120410160227|lab|12^XYZ LAB| OBX|7|NM|ig^Imm Gran^Local^38518-7^Imm Gran^LN||0|%|0-2||||F|||20120410160227|lab|12^XYZ LAB| OBX|8|NM|rbc^Rbc^Local^789-8^Rbc^LN||4.02|/pl|4.07-4.92|L|||F|||20120410160227|lab|12^XYZ LAB| OBX|9|NM|hgb^Hgb^Local^718-7^Hgb^LN||13.7|g/dl|12.0-14.1||||F|||20120410160227|lab|12^XYZ LAB| OBX|10|NM|hct^Hct^Local^4544-3^Hct^LN||40|%|34-43||||F|||20120410160227|lab|12^XYZ LAB| OBX|11|NM|mcv^Mcv^Local^787-2^Mcv^LN||80|fl|77-98||||F|||20120410160227|lab|12^XYZ LAB| OBX|12|NM|mch^Mch||30|pg|27-35||||F|||20120410160227|lab|12^XYZ LAB| OBX|13|NM|mchc^Mchc||32|g/dl|32-35||||F|||20120410160227|lab|12^XYZ LAB| OBX|14|NM|plt^Platelets||221|/nl|140-400||||F|||20120410160227|lab|12^XYZ LAB|"

parsed_message = parse_message(hl7_message)


 

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